O filme conta a história através do ponto de vista de Menma, além de incluir cenas de um ano após os acontecimentos da série.

Oga Tatsumi is a first year student in Ishiyama High, a notorious school for delinquents. One day he sees a man floating by, and the man suddenly splits in half to reveal a baby boy inside!.

In Toaru Kagaku no Railgun T Mikoto Misaka and her friends prepare for the Daihasei Festival, a seven-day sports competition between different Esper schools, which, of course, also include the Tokiwadai middle school.

A boy whose friend died and became a ghost, starts high school. On his first day, a trunk is sent to him by his brother. From that moment on everyone are after him believing that he holds the mysterious powerful "Asura Machine".